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genomic sequence data  (Biotechnology Information)

 
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    Biotechnology Information genomic sequence data
    Genomic Sequence Data, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genome+sequence+data/data+rna+seq+%E2%80%A2/pm42277643-384-1-15
    Average 86 stars, based on 1 article reviews
    genomic sequence data - by Bioz Stars, 2026-09
    86/100 stars

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    Related Articles

    Sequencing:

    Article Title: Empowering active surveillance of Carbapenem-resistant Enterobacterales: Insights from one year of genomic surveillance.
    Article Snippet: This work was supported by NextGenerationEU-MUR PNRR Extended Partnership initiative on Emerging Infectious Diseases (Project PE00000007, INF-ACT), by Ricerca Corrente n° 08075723 (1034-rcr2023–43), and by JPIAMR 2024_ IMPACT 197. .. Genome sequence data analyzed in this paper are available under BioProject PRJNA1266098 and PRJNA1019273 in the National Center for Biotechnology Information. ..

    Article Title: Metal-Organic Framework-Remodeled Gut Microbiota Alleviates Colonic Inflammation via Selective Modulation of Roseburia intestinalis .
    Article Snippet: Inflammatory bowel disease (IBD) is marked by severe colonic inflammation and oxidative stress-induced tissue damage, often accompanied by gut microbiota dysbiosis.. Probiotics have recently been recognized as promising therapeutic agents for IBD.. Herein, we examined the modulatory effects of orally administered metal−organic framework (MOF) nanozyme MOF-818 on gut microbiota in a mouse model of IBD.

    Article Title: Whole Genome sequencing data of Pseudomonas aeruginosa strain PA-Mosul-25, harboring the bla VEB-9 ESBL gene, isolated from a hospital environment in Nineveh, Iraq
    Article Snippet: .. The genome sequence data of P. aeruginosa PA-Mosul-25 have been deposited in the National Center for Biotechnology Information under accession number JBUYZG000000000.1 . ..

    Article Title: Photoperiodic regulation of Wnts in spermatogenesis of Brandt's vole (Lasiopodomys brandtii).
    Article Snippet: .. The genome sequence data of Lasiopodomys brandtii: XGi2017 (Brandt’s vole) used in this study have been deposited in the National Center for Biotechnology Information (NCBI) under accession number PRJNA523083. ..

    Article Title: Pan-genome analysis and phylogenetic characterization of Klebsiella pneumoniae from global isolates.
    Article Snippet: Aims: This study aimed to investigate the global genetic diversity, evolutionary relationships, and antimicrobial resistance (AMR) profiles of Klebsiella pneumoniae by performing a comprehensive pangenome and phylogenetic analysis across worldwide isolates.. Materials and methods: A total of 72,057 K. pneumoniae genomes were retrieved from the NCBI database, from which 91 high-quality representative genomes each from a unique country were selected based on completeness, metadata availability, and sequence quality.. Genomic assemblies were assessed using QUAST, annotated with PROKKA, and analyzed for pan-genomic composition and phylogenetic relatedness using standard bioinformatics pipelines.

    Article Title: Identification of a core set of Campylobacter jejuni flagella modification genes and a reversible non-motile maf3 phenotype.
    Article Snippet: .. Genome sequence data for the maf3 mutant is available at accession number JBPZXT000000000 in National Center for Biotechnology Information (NCBI) GenBank. .. Supplementary materials available on Figshare at https://doi. org/10.6084/m9.figshare.31411913 [1].

    Article Title: ST11 carbapenem-resistant Klebsiella pneumoniae integrates virulence plasmid fragments into the chromosome via insertion sequence
    Article Snippet: .. Genome sequence data reported in this study have been deposited in the National Center for Biotechnology Information under BioProject no. PRJNA540114. ..

    Mutagenesis:

    Article Title: Identification of a core set of Campylobacter jejuni flagella modification genes and a reversible non-motile maf3 phenotype.
    Article Snippet: .. Genome sequence data for the maf3 mutant is available at accession number JBPZXT000000000 in National Center for Biotechnology Information (NCBI) GenBank. .. Supplementary materials available on Figshare at https://doi. org/10.6084/m9.figshare.31411913 [1].



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    Summary of clinical correlations adjusted for sex, age of sampling, and stage. A, ChCC ( n = 61) and ( B ) pRCC ( n = 103). CN, copy number; MB, megabase; SNV, single-nucleotide variant; TCRA, T-cell receptor-α; <t>WGII,</t> <t>whole-genome</t> instability index;ll *, P < 0.05.
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    Summary of clinical correlations adjusted for sex, age of sampling, and stage. A, ChCC ( n = 61) and ( B ) pRCC ( n = 103). CN, copy number; MB, megabase; SNV, single-nucleotide variant; TCRA, T-cell receptor-α; WGII, whole-genome instability index;ll *, P < 0.05.

    Journal: Molecular Cancer Research

    Article Title: Contrasting Features of Papillary and Chromophobe Renal Cell Carcinoma Revealed by Whole-Genome Sequencing

    doi: 10.1158/1541-7786.MCR-25-0616

    Figure Lengend Snippet: Summary of clinical correlations adjusted for sex, age of sampling, and stage. A, ChCC ( n = 61) and ( B ) pRCC ( n = 103). CN, copy number; MB, megabase; SNV, single-nucleotide variant; TCRA, T-cell receptor-α; WGII, whole-genome instability index;ll *, P < 0.05.

    Article Snippet: We analyzed whole-genome sequencing data on 164 tumor–normal pairs from the Genomics England 100,000 Genomes Project, providing a comprehensive, high-resolution map of copy number alterations, structural variation, and key global genomic features, including mutational signatures, intratumor heterogeneity, and analysis of extrachromosomal DNA formation.

    Techniques: Sampling, Variant Assay

    Summary of clinical correlations adjusted for sex, age of sampling, and stage. A, ChCC ( n = 61) and ( B ) pRCC ( n = 103). CN, copy number; MB, megabase; SNV, single-nucleotide variant; TCRA, T-cell receptor-α; WGII, whole-genome instability index;ll *, P < 0.05.

    Journal: Molecular Cancer Research

    Article Title: Contrasting Features of Papillary and Chromophobe Renal Cell Carcinoma Revealed by Whole-Genome Sequencing

    doi: 10.1158/1541-7786.MCR-25-0616

    Figure Lengend Snippet: Summary of clinical correlations adjusted for sex, age of sampling, and stage. A, ChCC ( n = 61) and ( B ) pRCC ( n = 103). CN, copy number; MB, megabase; SNV, single-nucleotide variant; TCRA, T-cell receptor-α; WGII, whole-genome instability index;ll *, P < 0.05.

    Article Snippet: To address this shortcoming, we report the analysis of whole-genome sequencing (WGS) data generated on tumor–normal (T/N) pairs from 164 patients recruited from NHS Genomic Medicine Centres (GMC) across England, as part of the Genomics England 100,000 Genomes Project (100kGP, RRID: SCR_010502; refs , ).

    Techniques: Sampling, Variant Assay